Species Groups Research Articles

Tracing Geographic and Molecular Footprints of Copepod Crustaceans Causing Multifocal Purple Spots Syndrome in the Caribbean Sea Fan Gorgonia ventalina

The recent rise in ocean temperatures, accompanied by other environmental changes, has notably increased the occurrence and spread of diseases in Octocorallia, many species of which are integral to shallow tropical and subtropical coral reef ecosystems. This study focuses on the understanding of these diseases, which has been largely limited to symptomatic descriptions, with clear etiological factors identified in only a fraction of cases. A key example is the multifocal purple spots syndrome (MFPS) affecting the common Caribbean octocoral sea fan Gorgonia ventalina, linked to the gall-forming copepods of the genus Sphaerippe, a member of the widespread family, Lamippidae. The specialized nature of these copepods as endoparasites in octocorals suggests the potential for the discovery of similar diseases across this host spectrum. Our investigation employed four molecular markers to study disease hotspots in Saint Eustatius, Curaçao, northwest and southwest Cuba, and Bonaire. This led to the discovery of a group of copepod species in these varied Caribbean locations. Importantly, these species are morphologically indistinguishable through traditional methods, challenging established taxonomic approaches. The observed diversity of symbionts, despite the host species’ genetic uniformity, is likely due to variations in larval dispersal mechanisms. Our phylogenetic analyses confirmed that the Lamippidae copepods belong to the order, Poecilostomatoida (Copepoda), and revealed their sister group relationship with the Anchimolgidae, Rhynchomolgidae, and Xarifiidae clades, known for their symbiotic relationships with scleractinian corals. These results add to our understanding of the evolutionary and ecological interactions of copepods and their hosts, and the diseases that they cause, and are important data in a changing climate.

Scale morphology variability in cyprinid fishes and its significance in taxonomy using light and scanning electron microscopy: A case study of the genus Garra Hamilton, 1822 (Teleostei: Cyprinidae).

To evaluate scale morphological variability (shape, size, topological macro- and microstructures, ornamentation patterns) of cyprinid fishes, nine species of the genus Garra were selected and their scales from five different body regions were studied by using light and scanning electron microscopy. The scales of the examined species were thin with a central or antero-centrally positioned focus, with no cteni in the posterior part. In addition to these typical characteristics, some morphological variation was observed in the overall shape (irregular round, true oval, round-triangular, irregular pentagonal, hexagonal, irregular hexagonal, pentagonal, ovoid), and the focus shape. These variations were mainly dependent on the fish lengths and the flank region. Morphological analysis clustered the examined species into two distinct groups. Group I consisted of G. amirhosseini and G. gymnothorax, while Group II has three subgroups, which include G. persica and G. mondica (subgroup I), G. meymehensis, G. rossica, G. nudiventris, G. hormuzensis (subgroup II), and G. rufa (subgroup III). The grouping of the studied Garra species based on the current scale morphological characters and the molecular data was only consistent for G. rossica and G. nudiventris. In addition, in the phylogenetic tree, G. persica, G. mondica, G. amirhosseini, and G. hormuzensis formed a distinct clade. However, these species did not represent close relationships in the dendrogram obtained from the scale morphology. A possible explanation why the grouping of the studied Garra species based on their scale morphological characters does not match their phylogenetic relationships is that most of the scale morphological traits vary depending on the fish size and the location of the scales on the flank. Therefore, except for some traits, that is, central or antero-centrally positioned focus, having no cteni, a specific sectioned form so called "tetra-sectioned" type, the other examined variables are not useful enough to be used in the taxonomic study of the examined cyprinid fishes. Therefore, scale morphological characters should be used carefully for taxonomic purposes. RESEARCH HIGHLIGHTS: Shape, size, topological macro- and microstructures, and ornamentation patterns of nine species of the genus Garra were studied by using light and scanning electron microscopy. The scales were thin with a central or antero-centrally positioned focus, with no cteni in the posterior part. Morphological variation was observed in the overall shape (irregular round, true oval, round-triangular, irregular pentagonal, hexagonal, irregular hexagonal, pentagonal, and ovoid), and the focus shape. The grouping of Garra species based on the current scale morphological characters and the molecular data was only consistent for G. rossica and G. nudiventris.

Economic trade-offs of harvesting the ocean twilight zone: An ecosystem services approach

The mesopelagic or ocean twilight zone (OTZ) in the ocean contains huge numbers of fish in a relatively pristine environment and may therefore attract interest as a commercial fishery. In this study we evaluate in economic terms, the likely trade-offs between the different services provided by the mesopelagic layer in the Bay of Biscay and the societal benefits of its commercial exploitation. Benefits arise mainly from the likely use of this group of species as raw material for producing fishmeal and fish oil. Costs are derived from the loss in climate regulating and cultural, services, but also from the loss in the provisioning service of other commercial species. To do so we compare the current non-exploited status with a situation in where mesopelagic fishes are harvested at levels capable of producing the Maximum Sustainable Yield. Results suggest that if mesopelagic fishes are harvested, a mean value of 1.2 million Euro loss in a year will be created in the Bay of Biscay, although in a range between 42 million Euro loss and 48 Euro million benefits. This uncertainty comes, mainly, from the limited existing knowledge of the mesopelagic fishes’ biomass but also from the uncertainty on the biomass of the rest of the species of the studied ecosystem. The large range indicates that a better understanding of the mesopelagic ecosystem is needed, however, results also show that ecosystem services under no exploitation provided by the OTZ could be more valuable than the fishmeal and fish oil that potentially could be obtained from the fishes harvested in this sea layer.

Two new species of Eutheiini in Taiwan (Coleoptera, Staphylinidae, Scydmaeninae)

Five species of Eutheiini are known to occur in Taiwan, all belonging to the genus Eutheia Stephens. Two new species are described: Eutheia clepsydra sp. n., and Paraneseuthia spinipes sp. n. The discovery of the first Taiwanese species of Paraneseuthia, geographically not surprising, as several species occur in the south-western Ryukyuan islands, is highly unusual, because P. spinipes is morphologically distant from the Japanese and Russian Far Eastern group of species. This is the only known Paraneseuthia with modified profemora in males, and with dense groups of setae on the median lobe of aedeagus.

Exostoma sentiyonoae, a new catfish (Teleostei: Sisoridae) from Nagaland, Northeastern, India

Exostoma sentiyonoae, a new species of glyptosternine catfish is described from the Dzuleke River, a tributary of the Barak River in Nagaland, northeastern India. This is the fourth species of Exostoma described from the Barak drainage. The new species can be distinguished from congeners by the adipose fin adnate to the upper procurrent caudal-fin rays, presence of tubercles on dorsal-fin spine, anterolateral surfaces of lip with parallel and rounded striae, slender head 7.7–13.1% SL, long dorsal-adipose distance 16.8–24.6% SL, small eye 5.1–8.8 % HL, and 41 vertebrae. Two species groups within the genus Exostoma are proposed; Group I, in which the adipose fin is confluent with the upper procurrent caudal-fin rays, and Group II in which adipose fin is separate from the upper procurrent caudal-fin rays.

It's time for Africa - hidden diversity of the Aphidius colemani species group (Hymenoptera, Braconidae, Aphidiinae) south of the Sahara.

Aphidius colemani is an important biological control agent, used in greenhouses and open fields against aphid pests. Despite this economical importance, A. colemani, along with A. transcaspicus and A. platensis, has gone through a complex taxonomical history. The three species have only recently gained status as separate species again, comprising the morphologically defined Aphidius colemani species group. Other than sporadic records probably as a consequence of escape from greenhouses, the A. colemani species group members prefer warmer regions and there are numerous records from South America, Southern Europe and Asia. Based on slide-mounted material collected in the period 1964-2001 in Africa, we describe five new species belonging to this group, and report A. colemani, A. transcaspicus and A. platensis from several African countries. This data opens questions about the origin of the group and presents potential for the diversification of biological control agents against aphid pests.

A new species of genus Urophonius Pocock, 1893 (Scorpiones, Bothriuridae), from Andean Mauline Chilean forests, with a phylogenetic re-analysis of the genus

Urophonius trewankesp. nov. is described from the Mauline Andean woods of northern Chilean Patagonia. This species belongs to the granulatus species group, which includes the most basal species within the genus. This species is only active in summer as in all species of its group. We performed a phylogenetic analysis of the genus Urophonius based on morphological characters to establish the position and relationships of the new species in the genus.

A New Species of Zanthoxylum (Rutaceae) from the Brazilian Cerrado

A New Species of Zanthoxylum (Rutaceae) from the Brazilian Cerrado

Macromia kannharaiensis, a new species of dragonfly (Insecta: Odonata: Macromiidae) from Maharashtra, India

We describe a new species of dragonfly Macromia kannharaiensis sp. nov., based on a male and a female specimens collected from Dodamarg taluka, Sindhudurg district, Maharashtra. The new species belongs to the calliope–group (species group initially discussed by Laidlaw 1922), and it can be distinguished by its congeners on the bases of specific colour pattern on postclypeus, markings on S2 and S8, shape and structure of caudal appendages and accessory genitalia.  

Hypoxys (Hemiptera: Heteroptera: Pentatomidae: Edessinae): new species and updated identification keys for the species

ABSTRACT The genus Hypoxys Amyot & Serville, 1843 was recently revalidated and reviewed. Hypoxys is the second most numerous genus in Edessinae, with around 50 species described so far. Here, 12 new species of Hypoxys, distributed in three species groups, are described: H. quadridens group (H. afasciatus sp. nov. H. ambiguus sp. nov. H. variegatus sp. nov.), H. oxyacanthus group (H. bimaculatus sp. nov. H. stenospilus sp. nov.) and H. balteatus group (H. caienensis sp. nov. H. colombianus sp. nov. H. montanus sp. nov. H. oblongus sp. nov. H. splendidus sp. nov. H. tapirapensis sp. nov. H. tucumensis sp. nov.). Diagnoses for the species, distributional maps, and updated identification keys for the species groups of Hypoxys are provided. The female paratypes of H. breddini Mendonça, Nunes & Fernandes, 2021 are transferred to H. venustus Mendonça, Nunes & Fernandes, 2021. The geographical distribution of H. venustus is expanded. http://www.zoobank.org/urn:lsid:zoobank.org:pub:B1036FED-8D5B-4169-ACC3-52FCC2206D78

226 Oral and rumen microbiome characterization to predict host phenotypes

Abstract Studies have utilized rumen microbiome composition and function to predict animal phenotypes. Yet, sample collection for rumen microbial community analysis can be difficult and invasive and hinders the possibility of sampling large animal populations. In this study, we investigated the development of the bovine rumen microbiome over time, to identify the potential of the oral microbiome as a proxy for the rumen microbiome, and to test the applicability of using the oral microbiome for predicting phenotypes in beef cattle. We employed 16S rRNA amplicon sequencing to characterize the rumen and oral bacterial community structure over time and collected both birth and weaning weights in a population of 220 animals. Our findings show that both the oral and rumen microbiomes are established early, and a significant portion of the taxa persists even after weaning. We identified a group of core successional species shared between the oral and rumen bacterial communities, which are established early and persist over time. The oral bacterial community was dominated by phyla Proteobacteria, Firmicutes, Bacteroidota, and Actinobacteria, while the rumen bacterial community was dominated by phyla Bacteroidota, Firmicutes, Verrucomicrobia, Fibrobacteria, and Spirochaetota. Furthermore, we observed that 38% of Amplicon Sequence Variants (ASVs) were shared between the oral and rumen microbiomes at 50 to 120 d of age. At 170 to 240 d of age, 37% of ASVs were shared, and at 295 to 365 d, 33% of ASVs were shared. Finally, at 400 to 468 d, 21% of ASVs were shared. Based on weighted Unifrac analysis, notable differences and distinct clustering was observed between oral and rumen microbiome communities at different sampling ages (P = 0.001; R2 = 0.50969, 50 to 120; P = 0.001; R2 = 0.66247, 170 to 240; P = 0.001; R2 = 0.62036, 295 to 365; and P = 0.001, R2 = 0.66559, 400 to 468). Microbiability estimates varied across different stages and microbial environments. For the oral bacterial community at 50 to 120, the estimates were 0.029%, 0.032%, 0.029%, and 0.028% for birth weight, weaning weight, intramuscular fat (IMF), and ribeye area (REA), respectively. In contrast, the rumen microbiome exhibited microbiability values of 0.034%, 0.058, 0.059, and 0.069% for birth weight, weaning weight, IMF, and REA respectively during the same period. As the animal aged the microbiability increased. At 170 to 240, oral microbiomes showed microbiability estimates of 0.051%, 0.060%, 0.069%, and 0.21% for birth weight, weaning weight, IMF, and REA respectively. In comparison, the rumen microbiome displayed greater microbiability estimates of 0.12%, 0.124%, 0.20%, and 0.26% for birth weight, weaning weight, IMF, and REA respectively. In conclusion, the oral microbiome is not a good proxy for the rumen microbiome composition; however, there is potential to use the oral microbiome for phenotype prediction.

Redescription of Rhyacophila clemens Tsuda 1940 (Trichoptera, Rhyacophilidae), with descriptions of five new, allied species from Japan

Japanese species of the Rhyacophila clemens Species Group Ross 1956 are revised, and six species including five new allied species are recognized: R. clemens Tsuda 1940, R. vesperalis sp. nov., R. inazui sp. nov., R. angulicauda sp. nov., R. parvicauda sp. nov., and R. furcicauda sp. nov. Adult males and females of all species are described or redescribed, and the male genitalia of a Korean species, R. kumgangsanica Kumanski 1990, also belonging to this species group, are illustrated for comparison. The lectotype of R. clemens is designated for nomenclatural stability. The main diagnostic characters for the R. clemens Species Group are provided as follows: (1) Segment X bears an apical hinged process posteroventrally; (2) two pairs of anal sclerites have a common internal root; (3) a pair of large apical bands surrounds the anus and the root of the anal sclerites; (4) the aedeagus bears a large sclerotized ventral plate.

Nanopore-Based Surveillance of Leishmania Parasites in Culicoides Latrielle (Diptera: Ceratopogonidae) Caught from the Affected Community and Tham Phra Cave in Chiang Rai Province, the Endemic Area of Leishmaniasis in Northern Thailand

In this research, we elucidated the species composition of Culicoides biting midges, infection prevalence, and genetic diversity of Leishmania parasites circulating in the affected community in Chiang Rai Province, being the most endemic area in Northern Thailand. A total of 146 parous and gravid females, belonging to at least twelve Culicoides species in five subgenera and one species group, were trapped from three collection sites with an overall Leishmania prevalence of 26.7% (39/146). Leishmania was detected, using ITS1-PCR, in C. mahasarakamense (15), C. guttifer (11), C. (Trithecoides) spp. (8), C. jacobsoni (2), C. oxystoma (2), and C. orientalis (1). The evidence of Leishmania infection in these last five species represents new records in Northern Thailand. Given a high infection rate in cavernicolous specimens, this indicates an increased risk of parasite exposure when visiting the cave. Using the nanopore amplicon sequencing, L. martiniquensis was ubiquitously identified in all positives, and more than half of these were also co-infected with L. orientalis. The genetic diversity analysis revealed 13 and 17 unique haplotypes for L. martiniquensis and L. orientalis, respectively. Higher haplotype diversity and relatively low nucleotide diversity were observed in both parasite populations, suggesting recent population divergence. Neutrality tests (Tajima’s D and Fu and Li’s D) showed to be significantly negative, indicating rapid population growth or a selective sweep. Moreover, dominant haplotypes of both Leishmania species were 100% identical to those in all leishmaniasis patients previously reported from Northern Thailand, strongly supporting the imperative role of Culicoides spp. in disease transmission. Essentially, this research provides the first entomological surveillance data representing the sympatric existence, transmission dynamics, and genetic complexity of two autochthonous Leishmania (Mundinia) parasites in several Culicoides species in the endemic area of Northern Thailand. This would contribute to a more complete understanding of the epidemiology of vector infection and facilitate the development of vector control programs to effectively reduce the transmission of this neglected tropical disease in endemic areas of Northern Thailand.

Linker histone H1 regulates homeostasis of heterochromatin-associated cRNAs

Chromatin-associated RNAs (cRNAs) are a poorly characterized fraction of cellular RNAs that co-purify with chromatin. Their full complexity and the mechanisms regulating their packaging and chromatin association remain poorly understood. Here, we address these questions in Drosophila. We find that cRNAs constitute a heterogeneous group of RNA species that is abundant in heterochromatic transcripts. We show that heterochromatic cRNAs interact with the heterogeneous nuclear ribonucleoproteins (hnRNP) hrp36/hrp48 and that depletion of linker histone dH1 impairs this interaction. dH1 depletion induces the accumulation of RNA::DNA hybrids (R-loops) in heterochromatin and, as a consequence, increases retention of heterochromatic cRNAs. These effects correlate with increased RNA polymerase II (RNAPII) occupancy at heterochromatin. Notably, impairing cRNA assembly by depletion of hrp36/hrp48 mimics heterochromatic R-loop accumulation induced by dH1 depletion. We also show that dH1 depletion alters nucleosome organization, increasing accessibility of heterochromatin. Altogether, these perturbations facilitate annealing of cRNAs to the DNA template, enhancing R-loop formation and cRNA retention at heterochromatin.

Tracking data highlight the importance of human-induced mortality for large migratory birds at a flyway scale

Human-induced direct mortality affects huge numbers of birds each year, threatening hundreds of species worldwide. Tracking technologies can be an important tool to investigate temporal and spatial patterns of bird mortality as well as their drivers. We compiled 1704 mortality records from tracking studies across the African-Eurasian flyway for 45 species, including raptors, storks, and cranes, covering the period from 2003 to 2021. Our results show a higher frequency of human-induced causes of mortality than natural causes across taxonomic groups, geographical areas, and age classes. Moreover, we found that the frequency of human-induced mortality remained stable over the study period. From the human-induced mortality events with a known cause (n = 637), three main causes were identified: electrocution (40.5 %), illegal killing (21.7 %), and poisoning (16.3 %). Additionally, combined energy infrastructure-related mortality (i.e., electrocution, power line collision, and wind-farm collision) represented 49 % of all human-induced mortality events. Using a random forest model, the main predictors of human-induced mortality were found to be taxonomic group, geographic location (latitude and longitude), and human footprint index value at the location of mortality. Despite conservation efforts, human drivers of bird mortality in the African-Eurasian flyway do not appear to have declined over the last 15 years for the studied group of species. Results suggest that stronger conservation actions to address these threats across the flyway can reduce their impacts on species. In particular, projected future development of energy infrastructure is a representative example where application of planning, operation, and mitigation measures can enhance bird conservation.

Histological aspects of the renal sexual segment of Brazilian snakes of the Boidae family.

Snakes represent a wide and diverse group of species and have anatomical particularities, such as the renal sexual segment (RSS), a structure located in the kidneys and formed from the hypertrophy of the urinary ducts and nephrons. This study aims at describing the histological aspects of the RSS of Boa constrictor, Epicrates cenchria and Corallus hortulanus, all of which are Brazilian snake species from the Boidae family. The reproductive system and kidneys of five male specimens of E. cenchria, three male specimens of C. hortulanus and two male specimens of B. constrictor were obtained. Tissue samples were processed histologically and different stains used (Toluidine Blue, Alcian Blue and Periodic Acid Schiff). The histological evaluation of the RSS of E. cenchria, C. hortulanus and B. constrictor shows that the RSS in these species varies when comparing individuals in the reproductive period with those which are not. It also allows for the observation of the segment's secretory activity in animals in the reproductive stage (mature sperm in the lumen of the seminiferous tubules) as well as in those which are not. Finally, the histological evaluation also reveals the variation of the secretion product in individuals in the reproductive period, in those which are not, and also among individuals within the same reproductive stage.

The roles of rare and abundant microbial species in the primary succession of biological soil crusts are differentiated in metal tailings ponds with different states

Tailings ponds formed by long-term accumulation of mineral processing waste have become a global environmental problem. Even worse, tailings ponds are often simply abandoned or landfilled after they cease to be used. This allows pollution to persist and continue to spread in the environment. The significance of primary succession mediated by biological soil crusts for tailings pond remediation has been illustrated by previous studies. However, the process of primary succession may not be the same at different stages during the lifetime of tailings ponds. Therefore, we investigated the environmental differences and the successional characteristics of microbial communities in the primary successional stage of tailings ponds at three different states. The results showed that the primary succession process positively changed the environment of tailings ponds in any state of tailings ponds. The primary successional stage determined the environmental quality more than the state of the tailings pond. In the recently abandoned tailings ponds, abundant species were more subjected to heavy metal stress, while rare species were mainly limited by nutrient content. We found that as the succession progressed, rare species gradually acquired their own community space and became more responsive to environmental stresses. Rare species played an important role in microbial keystone species groups. Environmental ImplicationsTailings ponds from mining are distributed globally and cause many environmental hazards. The spontaneous primary succession within the tailings ponds is crucial for the ecological restoration of the area. Tailings ponds in different states (in operation or stopped using for different times) have different environmental characteristics. This determines that the primary successional processes may also be different. This has never been studied before. We explored the environmental characteristics of tailings ponds in different states. Differences in microbial community succession processes were also illustrated. This study contributes to the development of pollution control and remediation programs for tailings ponds under different operating states.

Circumscription and diagnosis of the Arge ochropus species–group (Hymenoptera: Argidae), with a description of Arge gussakovskiji sp. nov. from the Pamir Mountains in Tajikistan

The species composition and diagnostic characters of the Arge ochropus species–group are reviewed. This species group is circumscribed based on the structure of the genitalia. It contains only four species, including A. gussakovskiji sp. nov. described here from the Pamir Mountains in the Gorno-Badakhshan Province of Tajikistan. A key to the Palaearctic species of the A. ochropus group is provided. The differences between the A. ochropus group and the other species groups of the genus Arge Schrank, 1802 with similar coloration are discussed.

The southernmost member of the Simulium venustum species group (Diptera: Simuliidae) in the Old World: a new species from the Rif Mountains of Morocco

The polytene chromosomes, larva, pupa, and male are described for the black fly Simulium chaouikaidi n. sp., a member of the Simulium venustum group from Morocco. Chromosomally, this new species is one fixed inversion removed from the standard banding sequence for the subgenus Simulium and has microscopically undifferentiated sex chromosomes and minimal autosomal polymorphism. It is homosequential with two other species in the S. venustum species group: S. bergi Rubtsov and S. paramorsitans Rubtsov. Structurally, each known life stage of the new species is distinct from that of all other simuliids in North Africa. This new species is the southernmost member of the S. venustum group in the Old World and is apparently endemic to the Rif Mountains. Its restricted distribution includes Bou Hachem Natural Park where its habitat is afforded some protection.

Pseudoendemism in Mediterranean black flies (Diptera: Simuliidae): a new record for Africa

The first record of a European black fly, Simulium ichnusae Rivosecchi & Contini, is documented for Africa, where it was found at elevations above 1000 m in the Djurdjura Mountains of Algeria. Considered an endemic species of Sardinia for 60 years, S. ichnusae must now be regarded as pseudoendemic. Larvae, pupae, females, and males from the Djurdjura Mountains compare well with those in the original description of the species. Chromosomally, S. ichnusae differs from the standard banding sequence of the S. vernum group by a transposed nucleolar organizer—the only known member of the group with this condition—and three fixed inversions, all of which are shared by other members of this species group. The addition of S. ichnusae to the Algerian fauna increases the number of nominal species of black flies known from the country to 34. The discovery of S. ichnusae suggests that additional trans-Mediterranean species await discovery in the coastal Mediterranean mountains and emphasizes that claims of endemism depend on thorough surveys and taxonomic accuracy.